Scaffold Ga0209168_10000554

Overview

Basic Information

• Taxon OID: 3300027986
• Scaffold ID: Ga0209168_10000554
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 34942
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (78.95%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002681	Metagenome / Metatranscriptome	537	Y
F005312	Metagenome / Metatranscriptome	405	Y
F012712	Metagenome / Metatranscriptome	278	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209168_100005542	F012712	GAGG	MEARPRFPGMRWFLWLRIASLRTGVLTGIYLSCVFVAWLDIANRVKELEPYAELRNLIAGAILVMVLAIPALRFRNRPGKLFVSGLTAWTLLTLTYMAAEIHFTLLESRMGALHVFVLGAVSYGFVAVLDWVFQMCVVVRHEHIVHSRDTTPTAIRHNH
Ga0209168_1000055430	F005312	GGA	VVTYRAGDIILPATGKLAADSGKSIFLEESYQQQGSVKTFRWEIPYPCIVELNEAPEIPKPSASVNEQRESSTEGARQPGALEPKTRPA
Ga0209168_100005549	F002681	N/A	VTTPNVPDDLGPRPERLFGAYLFGLCIYQIGIYCWPGGPPFILDPRAGIPVLLINHFSFDNKVIYPVEWITAAWLVITAAINFFRGKFLIPYAAAEVVLAAPSAYYIGVLAVRHGGDFAPAFKDLVLTALLFLVFSLFPLAWAATRIFSGKRARV