Scaffold Ga0209168_10000219

Overview

Basic Information

• Taxon OID: 3300027986
• Scaffold ID: Ga0209168_10000219
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 64176
• Total Scaffold Genes: 72
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 40 (55.56%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004485	Metagenome / Metatranscriptome	436	Y
F008506	Metagenome / Metatranscriptome	332	Y
F015624	Metagenome / Metatranscriptome	253	Y
F101563	Metagenome / Metatranscriptome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209168_1000021916	F101563	AGGAGG	MGKYGFSVFLLTILAIAISLACGSSPPPRMLQSVTLSPPVADAQGSPVQFTATGNFNNQPTPVKLVTVNWGACYQNQPTTGVLVNAEGLAQCAAGAVGTYTVWGWADRGGGSCGTAGLVPANPCGGVGECEVTGTAKLTCP
Ga0209168_1000021921	F008506	N/A	MLDHEILKAVAEQMMTVGEVSIAGNTWRVTRTGARRFRTVRFVMGGTEYQAIEQNPEKPSRWGQLARAGHHVVQIRDLESGKYVAVVVDGKVTEYSRK
Ga0209168_1000021930	F015624	N/A	MKAEQWGIFDEEYRVVAVESQSLTIQGVRSGQVLTIVTQNPEAPLTPAEYPPGRLISLSDPSDRPVN
Ga0209168_1000021950	F004485	GAG	MERAEYIAGPASAAQYCHFWSDRVDALESHLSTDTWALAVVTVAAIAYPIARIVIPAVLHGAVPDVVRTVLSLI