NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209629_10301352

Scaffold Ga0209629_10301352


Overview

Basic Information
Taxon OID3300027984 Open in IMG/M
Scaffold IDGa0209629_10301352 Open in IMG/M
Source Dataset NameCubitermes ugandensis P5 segment gut microbial communities from Kakamega Forest, Kenya - Cu122 P5 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1550
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location
Location NameKakamega Forest, Kenya
CoordinatesLat. (o)0.2917Long. (o)34.856Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004007Metagenome457Y
F008821Metagenome327Y
F019492Metagenome229Y

Sequences

Protein IDFamilyRBSSequence
Ga0209629_103013522F019492AGGVLWIHGLRVMLLVQGRWEICVLTAVTAVLLRDVAMDTWTEGNVVSTGWRGNMCSACSYCSTVTSQCYGNMD
Ga0209629_103013523F008821GAGGVFCLQLLQYCYVTVLWIHGLRGMLLVQGRGEICVLPAVTAVLLGHSAMDTWTEGNVVSTG
Ga0209629_103013525F004007GGAMLLVQGRGEICVLPAVTAVLLYHSAMDTWTEGNIVSTG

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