Scaffold Ga0209629_10141112

Overview

Basic Information

• Taxon OID: 3300027984
• Scaffold ID: Ga0209629_10141112
• Source Dataset Name: Cubitermes ugandensis P5 segment gut microbial communities from Kakamega Forest, Kenya - Cu122 P5 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2441
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location

• Location Name: Kakamega Forest, Kenya
• Coordinates
  • Lat. (^o): 0.2917
  • Long. (^o): 34.856

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000032	Metagenome	4750	Y
F003173	Metagenome	503	Y
F033482	Metagenome	177	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209629_101411124	F033482	AGGA	LSLILFNLYSECLTKEALDGLGDFNIGGKIIQTVKYADDLVLMTNKETVLQGMIDKLIEI
Ga0209629_101411125	F003173	GGA	VEKTKVMRISRQSSPVTIMIEQKQLENVKSFEYLGSILTNDGIYACEIKSRIAMAKAAHD
Ga0209629_101411126	F000032	GGA	MEKISWADHVRNEDVLLRINEQRNILHEIRKRKANWIGHILPRLCLLKQVIEGKIKGEMEVARR