Basic Information | |
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Taxon OID | 3300027984 Open in IMG/M |
Scaffold ID | Ga0209629_10070364 Open in IMG/M |
Source Dataset Name | Cubitermes ugandensis P5 segment gut microbial communities from Kakamega Forest, Kenya - Cu122 P5 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3463 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Polyneoptera → Phasmatodea → Timematodea → Timematoidea → Timematidae → Timema | (Source: UniRef50) |
Source Dataset Ecosystem |
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Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany |
Source Dataset Sampling Location | ||||||||
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Location Name | Kakamega Forest, Kenya | |||||||
Coordinates | Lat. (o) | 0.2917 | Long. (o) | 34.856 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F018445 | Metagenome | 235 | Y |
F027231 | Metagenome | 195 | Y |
F057471 | Metagenome | 136 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209629_100703641 | F057471 | GAG | MISTIHDTTIVNKGSKDRKTNMEIKKPYTVVQYNIFMKDVDRVDQYLSTVHSELF |
Ga0209629_100703642 | F027231 | N/A | VRLAQTLLDSNVKVCGKKRANRGIPCDLEGEGMHLKKGQSAFWRKGYVIVQVLNDETCANDKYDP |
Ga0209629_100703643 | F018445 | GAGG | MLGPLLNRKSELSDRNGVLLYKQLIRSMMHYACPAWRSAARFHVRRLQVLQSKCLRLANVAPWYVSNRQLHEDLGVPLFADHIRALSASFDSKLADVAKPLVRQLGRYLR |
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