NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209629_10043881

Scaffold Ga0209629_10043881


Overview

Basic Information
Taxon OID3300027984 Open in IMG/M
Scaffold IDGa0209629_10043881 Open in IMG/M
Source Dataset NameCubitermes ugandensis P5 segment gut microbial communities from Kakamega Forest, Kenya - Cu122 P5 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4291
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location
Location NameKakamega Forest, Kenya
CoordinatesLat. (o)0.2917Long. (o)34.856Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000001Metagenome16856Y
F005709Metagenome392Y

Sequences

Protein IDFamilyRBSSequence
Ga0209629_100438811F000001N/ATVPEILQAVDRSIRTINTTGAAKGILRLPHRWQRVVINAGDYIEGQ
Ga0209629_100438813F005709GAGMISNDARCTREIKFRIAMARAGFNKKKTLFTRKLDLNLRKKLVKCYIWSMALVLECVNFG

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