Scaffold Ga0209284_10209679

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209284_10209679

Scaffold Ga0209284_10209679

Overview

Basic Information
Taxon OID	3300027983 Open in IMG/M
Scaffold ID	Ga0209284_10209679 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - FRY-03 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1008
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater → Freshwater Microbial Communities From Lake Liftoff Mats And Glacier Meltwater In Antarctica

Source Dataset Sampling Location
Location Name	Lake Fryxell, Antarctica
Coordinates	Lat. (^o)	-77.605	Long. (^o)	163.163	Alt. (m)		Depth (m)	18
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001140	Metagenome	766	Y
F004445	Metagenome	437	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209284_102096792	F001140	AGG	MEAQCKGGVRADGVASLIVAAGERRGLLGVGFENRMRSWVMK
Ga0209284_102096793	F004445	GAG	VQGRSESRWRGIMIAHRRGGREARLARGGIREHDAFLGHEMRGPAGTGRGGVSMA

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