Scaffold Ga0209284_10020651

Overview

Basic Information

• Taxon OID: 3300027983
• Scaffold ID: Ga0209284_10020651
• Source Dataset Name: Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - FRY-03 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4156
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater → Freshwater Microbial Communities From Lake Liftoff Mats And Glacier Meltwater In Antarctica

Source Dataset Sampling Location

• Location Name: Lake Fryxell, Antarctica
• Coordinates
  • Lat. (^o): -77.605
  • Long. (^o): 163.163
  • Depth (m): 18

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008805	Metagenome	327	Y
F036556	Metagenome	169	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209284_100206516	F036556	N/A	VKTLQDGPESVKEILWSEGQWLGEELEKAWKITMKYRATPCGNDQCKSKDLYVLTSAALPSTSLSPPLHAPFTPSTPGSQVPGVDLPCSPLHQVQGGVSPSRGNASKTRASLPPATVEQNRRELVAFSQQCWRFTNFMYNKGKIGILPLMVRLLIDTYRTAEHQPGRLRGELSSQEIKKYVAMC
Ga0209284_100206519	F008805	GAG	MQGKSENRWRGIAHCCGGREARLARGGIREHDAFSDHEMRGTAGTGRGGVSMAGGPEGQGARKGNRVRGHRLPSPPCFVQNLLKYFGFLSR