Scaffold Ga0247834

Overview

Basic Information
Taxon OID	3300027977 Open in IMG/M
Scaffold ID	Ga0247834_1020145 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_12m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Restricted
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components
Scaffold Length (bps)	4905
Total Scaffold Genes	19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (26.32%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Associated Families	5

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location
Location Name	Spain: Castile-La Mancha
Coordinates	Lat. (^o)	39.9879	Long. (^o)	-1.8737	Alt. (m)	Depth (m)	12
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F016774	Metagenome / Metatranscriptome	244	Y
F036564	Metagenome / Metatranscriptome	169	N
F044916	Metagenome / Metatranscriptome	153	Y
F064403	Metagenome / Metatranscriptome	128	N
F096610	Metagenome / Metatranscriptome	104	N

Family

Category

Number of Sequences

3D Structure?

F016774