Scaffold Ga0247834_1003369

Overview

Basic Information

• Taxon OID: 3300027977
• Scaffold ID: Ga0247834_1003369
• Source Dataset Name: Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_12m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 21896
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (9.52%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Spain: Castile-La Mancha
• Coordinates
  • Lat. (^o): 39.9879
  • Long. (^o): -1.8737
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001732	Metagenome / Metatranscriptome	644	Y
F020140	Metagenome / Metatranscriptome	225	Y
F025688	Metagenome / Metatranscriptome	200	Y
F035278	Metagenome / Metatranscriptome	172	Y
F056337	Metagenome / Metatranscriptome	137	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0247834_100336917	F020140	N/A	MIHKFAIIVDKAFYDKVQNDNDFYFRVMVLDVVRALVPNEESADKYSKIIFYKCAKSIADEVKIFEDENSVIFYLELSSGYLDDFFEKPLDDFE
Ga0247834_100336921	F025688	N/A	MKFILNIDGTNTGGKFLKNYVGQEVNLESLYKDIDINSPPLVILKTEDGKQHSVQLIDVRFINEFIFIYCFVIQHDDKHGGKALLRLKPCSNLEKVINP
Ga0247834_100336930	F056337	N/A	MSEKYNNNSYDAVLSRMEQKLDSIAENIDEIKKGHKELEKRVGGLEYFKYYLAGIVAAVTIGANYLIDKVKNG
Ga0247834_100336931	F001732	AGG	MKKSLILLLFLFLTGCFSTIKPAKQIDDNQKTIAKEEKKVDATVVEIEKNDKGKKIQTSALAQGIQYSLNQVTNPPIQVDTAKSLNERVVSIVGSPHIDEINRIKATVDLLNSAVEEERKKGLELLAKRDELINKLQKEKVELNEQYDDQLWQLTDKAKKVAEEADQNKAVLDTMSGMFGLNAVFWGLKKFFFSTLTTIIIFIVIFTILRLLAAINPVAAAVFSIFNIFGSGLISIVKALTPKAFEISGFLTKSKVDGYKSPLVKIIDVIQEFKINASKNPDKTFTVQHILDQLDREMDRPEKDLIDDILKEQKWIK
Ga0247834_100336938	F035278	GGA	MNDKHIKKILDEQFKIANLDLKYEDVCNNQTPNWLTKYSYAPEDNEKWKNWTMKYMREKMKLTKDKALIETAWIDLNFGLRTSTRSVKNKKKK