Scaffold Ga0209702_10012663

Overview

Basic Information

• Taxon OID: 3300027976
• Scaffold ID: Ga0209702_10012663
• Source Dataset Name: Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - FRY-01 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8364
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (9.09%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium microadriaticum (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater → Freshwater Microbial Communities From Lake Liftoff Mats And Glacier Meltwater In Antarctica

Source Dataset Sampling Location

• Location Name: Lake Fryxell, Antarctica
• Coordinates
  • Lat. (^o): -77.605
  • Long. (^o): 163.163
  • Depth (m): 18

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006069	Metagenome / Metatranscriptome	382	Y
F024033	Metagenome / Metatranscriptome	207	Y
F062908	Metagenome / Metatranscriptome	130	Y
F071403	Metagenome / Metatranscriptome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209702_100126632	F062908	N/A	MDISNNQRNLFGVIDRAYETYQRPIEKEVMNMGHINLIQARSSANYPYQKYNQLDVSTHIGCIGKSNSQRSDLPNPLIKCTPRRNETASRFNYGYDKQITTLPTEVSGVLIPNNFLRIIPNRSTQLCYQTTILPFNREIYNLSQNVQKYCPPDQDIFPNDNFQIKASRQRLTREELQGLPKLPATPAVP
Ga0209702_100126636	F006069	N/A	MIIEKPLKGFDNKLLYDKLNYPQCSCGACPRFYWNMLNIGSRGSGKTYTICKMIKHYEKHKITKDGVEYKLRTHLISPTIQANEIYQSLESLDMEKDAHDDYSDKLILDIIKDIKAEKAEYDKYLLYKKSYDTFLKTPETKYERLYETNPEIFNILEEYDYIHPREFKHEPPKINIIILDDLLGSDAFTRKTKSVLTNAMIKNRHIGVNFAVLVQSIRAVPKTIRMNCSIFQLAAFKNKKIILNDIYEEVSNVIGIDEFEMLYDHATNKKFGSLIIDTTNSKRFLSNLDFELFFDNKIKSNLIIKDE
Ga0209702_100126637	F024033	N/A	MNDIDEISRDLLKRKAQLLYPECESWIMDLALEGYYNSLKIPIVEE
Ga0209702_100126639	F071403	N/A	MDINKTRTITSFISSANRQPQDNTYNFTIDYPDGILSCRPNEYMEINVLSFDMPNTMYNINNKNNEFDIITPEETVRKTIPSGNYSVKTFMAKLKTLIANDFITITYNDAQNTYTFTKSNELEEEYKIKPISIGQLIGVLDNEEYEITTSGYTTGIINLINYNKIMVRTENVAYYYSNVENIRSNNNSVFNSNIIFWKTKTDIDPFKVLSYNNEDGGNSFVYKVENTQINSIIFQLRNERNEIITDAPNYMMVIQYNFYEKKDIINILISIDTIIKEVYNTILFTINRLKLLL