Scaffold Ga0209702_10007356

Overview

Basic Information

• Taxon OID: 3300027976
• Scaffold ID: Ga0209702_10007356
• Source Dataset Name: Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - FRY-01 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13512
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (73.53%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater → Freshwater Microbial Communities From Lake Liftoff Mats And Glacier Meltwater In Antarctica

Source Dataset Sampling Location

• Location Name: Lake Fryxell, Antarctica
• Coordinates
  • Lat. (^o): -77.605
  • Long. (^o): 163.163
  • Depth (m): 18

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003688	Metagenome / Metatranscriptome	473	Y
F042331	Metagenome / Metatranscriptome	158	Y
F052590	Metagenome / Metatranscriptome	142	Y
F060903	Metagenome / Metatranscriptome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209702_1000735612	F052590	AGG	MIVTNLDKMEKIVKANNNLSWTGWDIVDLKRSDSARTAVNGVRVKGLWYLQRVYNVTRNGWDIPNRYRG
Ga0209702_1000735615	F003688	GAG	MYTDAMRRAFHSVIPPKEFGVNIIDNEHFLTIKLDEKHFAGLVHDEKIQALQYVLKLKGALEMEGAIVLVTREALTK
Ga0209702_1000735621	F042331	AGGAGG	MNQNIKNMLASYGRSVLGAATAMFAAGVTDPETLVYSLVGAIVPVVLRAVNPSDKAFGRMPAESDIEAALKNVKVVKKAAAKKPAAKK
Ga0209702_1000735630	F060903	GGA	MPNFDDLTDDQKSQVMQLVILTVKEIREQIANDIEYTYKVWATHGKAKSRRTKKAFEVCADLARGLNEQV