Scaffold Ga0209702_10004235

Overview

Basic Information

• Taxon OID: 3300027976
• Scaffold ID: Ga0209702_10004235
• Source Dataset Name: Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - FRY-01 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21186
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (88.46%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Microbacterium phage Shocker (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater → Freshwater Microbial Communities From Lake Liftoff Mats And Glacier Meltwater In Antarctica

Source Dataset Sampling Location

• Location Name: Lake Fryxell, Antarctica
• Coordinates
  • Lat. (^o): -77.605
  • Long. (^o): 163.163
  • Depth (m): 18

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031446	Metagenome / Metatranscriptome	182	Y
F043342	Metagenome / Metatranscriptome	156	Y
F043418	Metagenome / Metatranscriptome	156	Y
F046310	Metagenome / Metatranscriptome	151	Y
F081085	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209702_1000423511	F031446	GGAG	MTNYDLDAWEDAWVDKNFKVYEPHQDDYVVVGTEERGVGRPMSEPSDIRDVTSTGRKRAAMMYPIFKDMVCEWAGLAKAGGGVEPIIGCASNIIQPNKGPDKGDRHHGPDKNVINNSPNNVHRICAKCHNRWHALNNKYYGPRPPADEPFVPLEEHDWEYHDSTSKADPGQIEKNEEWWSNKHKLLVNVDTE
Ga0209702_1000423515	F043418	AGGA	MGMLDDYGIDTSEIEAPSYDLQDGIYEMTVGDVYVKQGSQAYPDRSWVIIEYLVGEEGKKKSELFELPADPENITDNERQKLGYYVARLLDLGVERAAVNDIDRDDLIGLRGTLQLYSNAGKGKNAGKMFQNIKNVKITETSAAPQPAQKKARQTAASNPFA
Ga0209702_1000423516	F043342	AGGA	MTDATSELREFYNYIWGENPTVETITFVYLPVEHEGKWTPYMFEWPRQREGVIRHTLKWSAIKANVFYSPALFKAANPAKENVLGSWMLWVDFDGNAPKEWAQEEEAGSIFIPPPTLIVQSSIEGHEHCYWKLNEFVSDIEELEDKNRALAYVMHADTSGWDADQILRPIRTTNHKRNMPVIVKEWEREEQL
Ga0209702_1000423521	F046310	AGG	VVISVDPGETTGIAYWSDAGEFVEREALTQDELLDKLEILENVTAVVCEDYRLRQGKQMVQTGSRFVAVQIIGALKAYARRVGAKFFLQPANVLTVAALHSGVKRPSNHAKSHDIDAYNHGYYYFETKGLLQPKPL
Ga0209702_100042359	F081085	GGAGG	MLDEEFLDDVNELWVDDLYDMDEGQLRKEIEQYSRLARRYPHPTSNSLAYRFAFLRYGEALKILEARSK