Scaffold Ga0209702_10003612

Overview

Basic Information

• Taxon OID: 3300027976
• Scaffold ID: Ga0209702_10003612
• Source Dataset Name: Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - FRY-01 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24043
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 35 (89.74%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater → Freshwater Microbial Communities From Lake Liftoff Mats And Glacier Meltwater In Antarctica

Source Dataset Sampling Location

• Location Name: Lake Fryxell, Antarctica
• Coordinates
  • Lat. (^o): -77.605
  • Long. (^o): 163.163
  • Depth (m): 18

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007738	Metagenome	345	Y
F021053	Metagenome	220	Y
F025663	Metagenome	200	Y
F054612	Metagenome	139	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209702_1000361213	F021053	GGA	MTRHISTYPGTLILPDGTEVKPGGDVLISADMAKNEGVAGWIGSGWLVPAKAEAMPTGKK
Ga0209702_1000361215	F007738	GAGG	MSGAAIAAEVALAYAEAGREAGDGVEAVYVTITRTGQPTGPEWNPTPGAPVIHTFTAKPSSGQAYTQRTGLALGAGELVYSLVNYGVTITPSTSDVLTVYGANWPVQEVIPMDSAGYVISWMVKVSK
Ga0209702_1000361223	F025663	AGGA	MDCFDSVSAAEAGAWLHLTNLRTDAPAYVTGKDGTPDLSKPMRINLIGMDASASKAKARKRATDILKRRGGKMDFAKMSPAQIGAVIDEGQEGIVQAAVDQTIGWENLSLDGKPVEFSEDAAFAIYRKYPSILDEVTEFLKDRANFFAQA
Ga0209702_1000361224	F054612	GGA	LERANEQPDFPELPFRAYLAEWLMDVGPVMQCGMGPVALSHLEIQAWAANIGLKFDGNEAEWLQKMSGVYASELFESNGKNTPQPFRE