Scaffold Ga0209702_10002999

Overview

Basic Information

• Taxon OID: 3300027976
• Scaffold ID: Ga0209702_10002999
• Source Dataset Name: Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - FRY-01 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 27728
• Total Scaffold Genes: 62
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 39 (62.90%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (75.00%)
• Associated Families: 12

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater → Freshwater Microbial Communities From Lake Liftoff Mats And Glacier Meltwater In Antarctica

Source Dataset Sampling Location

• Location Name: Lake Fryxell, Antarctica
• Coordinates
  • Lat. (^o): -77.605
  • Long. (^o): 163.163
  • Depth (m): 18

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000497	Metagenome	1075	Y
F002594	Metagenome / Metatranscriptome	545	Y
F005072	Metagenome / Metatranscriptome	413	Y
F011527	Metagenome	290	Y
F013138	Metagenome / Metatranscriptome	274	N
F015799	Metagenome / Metatranscriptome	252	Y
F024421	Metagenome	206	Y
F026714	Metagenome	197	N
F027353	Metagenome	195	N
F042096	Metagenome / Metatranscriptome	159	N
F047310	Metagenome	150	N
F047923	Metagenome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209702_1000299915	F026714	GAGG	MVEKYKKLTVYINEEQEKVLKDFDLQILEKDQFPLLHYTVNLISKRLEDTNNRIISNVDPNSCDSVTLQYGSQTI
Ga0209702_1000299922	F047310	AGGAG	MEYTGYIVLKFYDKDKEKVDSPKRLHETIFLKPEYNINTNKENKPDILPIYTSLKDAEADADWWSGHTNEDYGIVKKVTITIEDKDTFNTIESERKTLNSLISKYPEDNQVYKDTLKEISWYNKD
Ga0209702_1000299926	F027353	GAG	MTKPVENKVPLSFREKADSRVLFRLFNPKRNKSKSFTIYEKAKLSETLKQAFNNDYRKVDIDYDTTANNRFKKANVLVDMPQYLVKSKKEMYEEMLSSNREFYKNNKVPQSILDTQKYFEQIISKL
Ga0209702_1000299928	F000497	N/A	MKKIEENKVALSFREKLNTRLLYRLFNTKRNNTKSFNIYEKAKFSTNIKDAFANDYRKIDIDYDTTINNRFKKANLLIDLNSYLDKNKKDLYLDLINSNKEFIKENKVSNEILENIKYFETKILAL
Ga0209702_1000299933	F013138	GGAGG	MSDAFTRQSISNHNSKNYSVEDVKKSNKRFYEKFPGAIEPAAMIKKAMQNPDDEVVLEQTRKENEMENFIGKLNITRSIY
Ga0209702_1000299934	F015799	AGGAG	MTMTQKTTRTAVKYNSSGAAAGFSPQAHPPKQDPSAAKTIQDKVKGNSDYHSDNAAFISKLKRS
Ga0209702_100029994	F011527	N/A	MLVYFQFRRCGYYANGLVEAKDLDSAAEALWSEHVSTFKWHDQKKDMPKKANTLTIEEYTYEPSSNGKTEPKEELRSQVG
Ga0209702_1000299946	F047923	GAGG	MGVTPGEVRQAKKFLENNKISIKYVKPNLFAIASNGLKKNFTETLNYFQKGTSGTIDSSDQKKD
Ga0209702_1000299947	F005072	AGG	VERLIQAIKKKIKDHKQELSQNLLGKGVEDISEFKRVYGYGQGLDKAFNIINETIEKYKKGGELEEDDQ
Ga0209702_100029995	F024421	AGGAG	MSQALMEKLNQKRNLEARWASEFLGNGAVTVLMVNISREIKKIEQEIKDGSEDNLV
Ga0209702_1000299955	F042096	AGGAG	MAGSDITANSTSTTGSNVALFGGPTRLKAFIITPTAAAGSVVFADNDITKFAVTTGASADSGPINISLPEMGVKFDTNLQVNLTNVGGITAFYA
Ga0209702_100029996	F002594	N/A	MAKIPISRLNSAPEEYKANQFNQLIEDLQDMVKILNSTYPKDQSDVEERKNFFFLRSN