Scaffold Ga0209702_10001555

Overview

Basic Information

• Taxon OID: 3300027976
• Scaffold ID: Ga0209702_10001555
• Source Dataset Name: Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - FRY-01 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 43573
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (20.51%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater → Freshwater Microbial Communities From Lake Liftoff Mats And Glacier Meltwater In Antarctica

Source Dataset Sampling Location

• Location Name: Lake Fryxell, Antarctica
• Coordinates
  • Lat. (^o): -77.605
  • Long. (^o): 163.163
  • Depth (m): 18

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002779	Metagenome / Metatranscriptome	530	Y
F006895	Metagenome / Metatranscriptome	362	Y
F049638	Metagenome	146	Y
F071737	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209702_1000155520	F006895	AGGAG	MIGERFNYSETFLRDLTLTVLDTLEGRVKWINKFSSGDVEVNVPFYYSLSGDERFLLDSFQDDVVSNNRFVELNTDIIPRGHITLTNWAVRSDEFRNPNVWLRDISEEKKNLKTVLRKVRAIPVTVNYELSILLKTEIDVFKCSQSILNTLWLYKFMFFEYNYMNIDAFLLVPDDTSVEIVREKNLSSDNNIKLTLSLSVQTYYPAFIEDQSVHPYRTRWYNNIIALRNKSGNSTRPDSDTTD
Ga0209702_1000155521	F002779	N/A	MKNLKLELFNFKKGLNFDRSEIAYIIEGHMNFSDNEEKNVISSLNGKLKPFMYDSGVKSLLEGLNDDYIQYELLYELKNLYNVINSKNQGEVYRHPLNVLLQTINLETDQDRMSKILNELAVYDWVPEIRLFVHNLTDSPEQKTNLLSGGRVEPVYTIVEQVEEGHLAFIQDSWFLLSEGTIEKTLLEAHVKDDNKLRTLRTLETALQFCNVSESRIDFRISEYLTIGIGVEKKGLFINEDELNGESTLESVFSSPVIPIVNKNFYPIILEVSNNMDSFVELDVVKRVSNLINPTLEVFAFNFKDNIFLYRCDERYGHSFFKYDSAIELVNEVKNELNCDLTYFFEDKMGKETMSRRRLEDKEREITLKLEDVNFNISKIKGSIQLIGGTNVLNSALRNLQKRKENLDSEILAIKEVKFQEVTRF
Ga0209702_1000155531	F049638	N/A	MKAKDIMEKYQITRRTLSNWVKKGTIGTKLTPSGRYIYFEKETVRDEEV
Ga0209702_1000155534	F071737	N/A	MILTRDISVKVIESNLQYFENMGYEISIGDIIKIPIELISKGSHHKINCECDGCGIQKEVIFKNYVKYDNTWGYYYCRKCSEKKRKASLKKNFGVEYPIQNKEIYEKMKKTISDRKSDTQTVYKDR