Scaffold Ga0209702_10000701

Overview

Basic Information

• Taxon OID: 3300027976
• Scaffold ID: Ga0209702_10000701
• Source Dataset Name: Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - FRY-01 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 69847
• Total Scaffold Genes: 99
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 66 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater → Freshwater Microbial Communities From Lake Liftoff Mats And Glacier Meltwater In Antarctica

Source Dataset Sampling Location

• Location Name: Lake Fryxell, Antarctica
• Coordinates
  • Lat. (^o): -77.605
  • Long. (^o): 163.163
  • Depth (m): 18

Associated Families

Family	Category	Number of Sequences	3D Structure?
F055453	Metagenome	138	Y
F071209	Metagenome / Metatranscriptome	122	Y
F078676	Metagenome / Metatranscriptome	116	Y
F097281	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209702_1000070115	F078676	AGGA	MTKQIHGAASSMQNLTADLQYYVCYASSPGAFTDPNPNPPASQEIIRLMNIQVTGNPLDESQKNFEVLLMSIGLRAMPVVLSDPYAVIELADLTQELSGEGFVWKFAVERGVQFFNFTPYGTPGPVGLLVDDLNGVIIPSGVRVTTVSGSPTGWAKNTVFSRMQSV
Ga0209702_1000070162	F055453	N/A	MKLKDILLESPTDVVARFYIEASAASDKFYNPEDVKYKEKTSAYYKEHFDSWFKEGKVPVFEKPTDLVQPEYTNEPKQGKLQSPGFRGLQYALAAAGLPYNHKLQAYEPNAAGIVATPTMDAAQNNNGQ
Ga0209702_1000070166	F071209	GGA	MDKHKYIPMNNLVKDKKTEWTFTHLNMEYIEIAKHGIVMWCIENLEGRWTMLGGNKFAFEDGEDATLFKIQFGFGVS
Ga0209702_1000070175	F097281	N/A	MTKQKTTGEQPVNMKEKNASHTFRVTIRDQPHFYKIVNWLNTNVGKGEDKWTMEGRVLRILKQGKTVSPNIYIYRVDFEESNALYLSLL