Scaffold Ga0209299_1013428

Overview

Basic Information

• Taxon OID: 3300027974
• Scaffold ID: Ga0209299_1013428
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_MF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3851
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (76.92%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006842	Metagenome	363	Y
F022400	Metagenome	214	Y
F024719	Metagenome / Metatranscriptome	204	Y
F034906	Metagenome	173	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209299_101342811	F024719	AGCAGG	MTNVVELPNRNKITVVFYEVSDPQDIAVWGGESPREALDWYRRSPTGSKIWVSQYETDEEEARLVLDLIEITPIVLATITDSIDRWSK
Ga0209299_101342812	F034906	GGA	MEQMKNTHRVKAAADQAVRQRNYRRARERALTRLANAFPDIYRAYLEEEKDIDENMGKKWLDIDGNTSLVNTRTQ
Ga0209299_101342813	F022400	AGG	MRRTITKSSQRTTLKLVSAGKEESGSASSPFGPVRAGLITTRPTNEVVQLTELLNYLERKIVEANIKSLEVLNTYLNDTEHHV
Ga0209299_10134288	F006842	N/A	MKATPAICGDHLVPISECDCLSYMREIASSAERLVQLAKEREAMK