NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209298_10033796

Scaffold Ga0209298_10033796


Overview

Basic Information
Taxon OID3300027973 Open in IMG/M
Scaffold IDGa0209298_10033796 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2459
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003304Metagenome494N
F007747Metagenome / Metatranscriptome345Y
F011753Metagenome / Metatranscriptome287Y
F021063Metagenome / Metatranscriptome220N
F033721Metagenome / Metatranscriptome176Y

Sequences

Protein IDFamilyRBSSequence
Ga0209298_100337961F011753N/AGRACSTDEVLKPYIETFREWASKNVEKTYWCEKGLVGAGYAGRCDAYVKLRSIGDAIIDLKNRKVNPKYDPFYDTDCAQLWAYRAASENPKCACVSVVLASNDATKLTTKVWDEDELYQAGIAFCAMQKVWSWVKGYIPPGMKL
Ga0209298_100337963F033721AGAAGMRWIRKEFDEDGKPEWAVYIDEAGDGREEDWSHFDTYPTRQEAIEGCRNITWEDYDCSDK
Ga0209298_100337964F007747N/AMKLGVIQFGKSRPAPKAVIVDVTFDDKTKIALFRTGLRLLKFDKEAVIEYVIKKSLEYKLKK
Ga0209298_100337965F003304GGAGMKKGLVTQAFGDDWKKILELTQPRMEAYCKRHKIDFMALEKPLVEPVQYSKSAIGNIMATKGYEQITFVDCDILIANDCDEIGSEVEMFSAFDEGAFLDRKYEMGKLASAFGARIDPRFYVNTGVFVISSKAVGVLSMPPLGLLPNHFAEQTWMNIMIHLWNVPIDNLDPAYNCMTSVESHFGLDRHKDAFCIHYAGQSNDLVKLAEQIKADDAKLVELGR
Ga0209298_100337967F021063N/AMRSTHLTKGDYDERLQQLAGEVALQAIRDLRMLRKRGMVQNMKIVRDHHGVPLNDALEYKNMHEVQNLLKDFKNGTVAWWCRASGIRIDNRTLLRKLEDNDYAIA
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