Scaffold Ga0209298_10030721

Overview

Basic Information

• Taxon OID: 3300027973
• Scaffold ID: Ga0209298_10030721
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2604
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031032	Metagenome / Metatranscriptome	183	Y
F033727	Metagenome	176	Y
F088280	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209298_100307212	F031032	AGG	MSLMLTSDYYIVFMNPSKHKQEWNTLKLIMKVAEVKYCVFIDFKIYSLEIHAVDRLEFETYQYNSN
Ga0209298_100307216	F088280	N/A	MIECPECEGCGYVTVDLNDTYIPYEQKLVDYDCMLCDGKCEILCKDQVEDRIGMVDDIIQGMQDRMRVISDTIMFCKKGLLHELSEKYVYRLDTCARGLGRLLNYRKKLHNLVA
Ga0209298_100307217	F033727	N/A	MKQQAIVLKNANGITRQMVNNHLQKHELSLNAFSKLVGIKQPNLHKFMNGKRLSSRSIEKLGEFFSK