Scaffold Ga0209298_10020177

Overview

Basic Information

• Taxon OID: 3300027973
• Scaffold ID: Ga0209298_10020177
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3345
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (11.11%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003714	Metagenome / Metatranscriptome	472	Y
F010765	Metagenome / Metatranscriptome	299	Y
F019449	Metagenome / Metatranscriptome	229	Y
F021107	Metagenome / Metatranscriptome	220	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209298_100201773	F021107	N/A	MITLLLIVVAFAGGFYAGVKNAKSAKVERAVDILKALKSKD
Ga0209298_100201776	F019449	N/A	MTTETFTTIIVPGIASLAYFSAGVACFFAHRPALAVMWLCYSIANICLLSTVLRK
Ga0209298_100201777	F010765	N/A	MPVALRDIVFGVLIGAAAWLIRYLCSPDKYSMGYILRRTATAGLASLLVGLATKGYFSSEGMAFAAAGCAGYAAPELWDALLARARALKAKSPPKE
Ga0209298_100201779	F003714	N/A	MPNAHHPYTETLTFAGRVLPLKRPMASFAARRLQAILPQIAALNAAGKSQGDAAAALETTVTTLRHWLDITGTTWVNVKRRGPYS