Scaffold Ga0209298_10016711

Overview

Basic Information

• Taxon OID: 3300027973
• Scaffold ID: Ga0209298_10016711
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3747
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (23.08%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000957	Metagenome / Metatranscriptome	821	Y
F003714	Metagenome / Metatranscriptome	472	Y
F005588	Metagenome / Metatranscriptome	395	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209298_1001671110	F000957	N/A	MSNFQHLEGMRNLLIEIYEVNERIMTGDIISAKAAIASTNVKKILTHYHEALHEDGAVKVSLQAYVAAGGWVGIQYSMEIDGFEIAGSQVPRRV
Ga0209298_1001671111	F005588	N/A	MITTIRPNKMPTLWWLFPWAYARTLHMSANAVKAYADRQDQALEIFRGVIEIKDAEIRMLKQRVRDQDDAIIKGTAITPDAYPHE
Ga0209298_1001671112	F003714	N/A	MPNAHHPYTETLTFAGRVLPLKRPMAEFAARRLEAILPQIAALNAAGKSQADAAAALETTVTTLRHWLDITGTTWVNVKRRGPYSSRA