NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209298_10012495

Scaffold Ga0209298_10012495


Overview

Basic Information
Taxon OID3300027973 Open in IMG/M
Scaffold IDGa0209298_10012495 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4457
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001733Metagenome / Metatranscriptome644Y
F012219Metagenome / Metatranscriptome282Y
F031872Metagenome / Metatranscriptome181N
F050378Metagenome / Metatranscriptome145N

Sequences

Protein IDFamilyRBSSequence
Ga0209298_100124951F031872GAGGMVESLVVDEWIYDTLTADATLQGLLAVDNRSPSYQQGIYLYLAPEKDPISLRQPQVPYIVVRHTDAGQADTTSMCGGRIVTTSSHQVWCWDTQSGAVSMARIKAIVNRIDTLLNKQSVNSTTPVFFLNRASVSSSVDVSQDGRVDNGIAQIYVAT
Ga0209298_100124955F012219AGGTGGMNLQNFYIQKEPAPSTDWLVFGDIEDDNGQPLGTFGVDGTSVNVWWVQQDEQFQYSIVQQFAVIMAQQIISGDAE
Ga0209298_100124956F001733GGAGGMNSISIKRLVVVVIVAFTAAFTSVFGDGVRTSEAKDITELGAVLALYGSKAVAAGVSASVSSVLAFLTMPFKGVGVNALKVGK
Ga0209298_100124957F050378GGTGGMSVEMWVQIGIQAFITTVSIGAAWVALMVRLTRLETQVAYIITTLDGQQQEVRRIEQRLGKLENKVSALEAIINR
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