Scaffold Ga0209298_10011139

Overview

Basic Information

• Taxon OID: 3300027973
• Scaffold ID: Ga0209298_10011139
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4784
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (88.24%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F055683	Metagenome / Metatranscriptome	138	N
F064669	Metagenome / Metatranscriptome	128	N
F082597	Metagenome / Metatranscriptome	113	N
F099193	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209298_1001113914	F099193	GGAGG	MYIMMDESRLKREFTEENLTAWAEYRAECHRANYYFKRDGWSEGTLFDWDPEKKECTLQLRWGDDQNNQENYCHYEDLDEQEYLRQYDEYVLSVKLTDLVS
Ga0209298_1001113915	F064669	AGAAGG	MANSRALHPVEQWVQHITKTTPDLILGTLQHADLEMAQQLSNQMQLRGLSMQDIERLKNRKQPVSTT
Ga0209298_1001113916	F055683	AGGAG	MAQLNTTQDILQYAKAQSGITQQESVGGSLYCEMIDADQAEWFRKDLQEKVNSNTEVKMYALGKGINRDRQEYVYDFVPKTQTEIPAEVEQMIELEAEIQRGK
Ga0209298_100111392	F082597	AGG	MSLSTYWHDLIEFKTEHAPFTVKVDYTYEEEPLESLFPEESAEWYKETARKVERSDMPYVIVRAKVFLDGVPLADNNLGGMLFDSWEELELSMTQDDHGLIAETVQEARDQWDRLQQLMSTQPKVVA