Scaffold Ga0209298_10009916

Overview

Basic Information

• Taxon OID: 3300027973
• Scaffold ID: Ga0209298_10009916
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5110
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (8.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002843	Metagenome / Metatranscriptome	526	Y
F007260	Metagenome / Metatranscriptome	354	N
F017997	Metagenome / Metatranscriptome	237	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209298_100099163	F002843	N/A	MIVPVDIVAVQCNQNNSLFVTTGIDYDSDGAVVGSEITSQYTLNPGDSLEGQPTEVVNIANALWTPAVVEAYKAANPVVEAVQPTE
Ga0209298_100099166	F017997	N/A	VNFIEQIVTALLKWLTGFVQTSPTVEDAKRDPDLKKKLLDRIADSNR
Ga0209298_100099169	F007260	N/A	MSVLQSAMGNPSFLWQGVLVRCLPAAITDANSVISGGFQDNVQARVLVKFSDWRLADSTLVTVDAAVWSCDVGANVDRLLQESGSLLLQENTDRLLLNFGKMIPVVGRLLTYDGRQMRIVSAKRDASGGFYILDLAAKTK