Scaffold Ga0209298_10006952

Overview

Basic Information

• Taxon OID: 3300027973
• Scaffold ID: Ga0209298_10006952
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6293
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007911	Metagenome / Metatranscriptome	342	N
F015449	Metagenome / Metatranscriptome	254	Y
F024499	Metagenome / Metatranscriptome	205	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209298_1000695211	F024499	N/A	MSEFTECLKESLAALYDQTGTAATIGSTSVTGILSTITRKESVELGGFDLDLNSTFTIDLSAISSAPTIGSILLANSVSYRVASIDTSIGSYVLGLREV
Ga0209298_100069524	F015449	GAG	MVDSFWGTTNIKVAAAVAAFGAKLRESDPVTCIVEEGGHRKFTFWFSTNGDQDAKAEMERTWADMKSEPEAAIRYVRGALENRETLLGLMKRAEPILSIKRGSQTLLISERASPELKRAMLKKL
Ga0209298_100069526	F007911	GGAG	MPAVTMLDRLIEAAFQELLSATVTGPTYHLSHDKTENMPPSIVIKATLGTEEPVQGSGVFSVPVEIVVDDSYDDTTLDAHTQKCSKILQVFYDSSPLATRLNATTAIGSARCYNAKLESVEPEADDEERTMRRTYRLAVIAYPNSIAS