NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209298_10002966

Scaffold Ga0209298_10002966


Overview

Basic Information
Taxon OID3300027973 Open in IMG/M
Scaffold IDGa0209298_10002966 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10347
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (30.43%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F062767Metagenome130N
F072351Metagenome / Metatranscriptome121N

Sequences

Protein IDFamilyRBSSequence
Ga0209298_1000296610F072351AGGAMSLSTANVCPAILTSLADNLINNPSNVQIQGGMLAALTSPSNLGAGQIIRQANDNGSGQLKEVRVVYKQRKLASSASDTKDCVADGQMNYIEETVQINNYRGVSFTMSEAQLRTYCESYAELVQLTGSTQPNQIVERANSIGAAQGALSVVREMFVDFQLSANALVQAINDDLIIAALGGVGAWFGNVANPTYTVENSSDGSVKAKGLFEMKQSYMNTGFNGAPIIVGGAGALQRVWMNDSRYFGQGANGINFATVRDNTGIADFYFDTNIAANMTNADSAIVFAPGSLLYLPYLNYVGNYGQIGTMTRFTMPVPQLPSVRADIRILPDECNETYSVWMEAAFDLYSAPTAMFPAGDANQGVNGVFKAQFVAA
Ga0209298_1000296614F062767GAGMKLTKVTVESAIKNLCENIASTYVGLALNYGEAVESIIEGSAGNYVTLDGSTYCAVNDTYPIVLFLVRESASVEPTPAGGRATSLLRRVNFKLVANSKLENAEFALTSIINRTKGITYEGTDYNSKAIANQYFGIAERNFETHFFALDLSVTEKISCEVSC
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Institute for Fundamental Biomedical Research
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