Scaffold Ga0209298

Basic Information
Taxon OID	3300027973 Open in IMG/M
Scaffold ID	Ga0209298_10002110 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027973 Open in IMG/M

Scaffold ID

Ga0209298_10002110 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	12489
Total Scaffold Genes	22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (40.91%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

12489

Total Scaffold Genes

22 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (40.91%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005846	Metagenome	388	Y
F011284	Metagenome	292	N
F012113	Metagenome / Metatranscriptome	283	Y
F025739	Metagenome / Metatranscriptome	200	Y
F093506	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209298_1000211010	F011284	AGTAG	MTSSESVEKKEKLFTKKHDLHMSTIQMAAVECIEKKYKRGVEEHGGTKLWEMPSVSLVENAIEEATDQLTYLLSLRQQMHIVLALAKDGCLDETLTNPRARECCNLIYTTLTGQSKPPL
Ga0209298_1000211012	F025739	GAG	MRLLTTAACGIQKWILGFIAVSFLCGCVTTRPYDIGQTPHQESISDFIMRWDKLDRQKASPQEYRELYAQTLKALSRSMEETERCKSRLEK
Ga0209298_1000211013	F012113	N/A	MNQLLSFVQTQDLFAWLGALTALLTAAIAVASLFPGDEPEATLQKIVDFISKYLSRK
Ga0209298_1000211017	F093506	AGGA	MSATIISNITSFDYEPDIITDNGRDGISTFQFSIVGLFSALNSNFSLDQVVNGVPDQPPGNFRVVRRNMSHIAGDTSTGLYRLEVSAEGGTGDNSLYILETSYQYQKEIVSGFVQTPAQDIAINYICEWLSPTATITTNSQGEDVTDVQNKAKAFVSNLKVQIIRNKPATLAPVGTVQYPVYGFAIDENIINVVGSSVEKAGGLFRVRASATKGQMQSAL
Ga0209298_100021105	F005846	N/A	MTSFPLPARPQPSAVPASHTEFSKDTSIEGKANGWRGLFHQKTGIGYNRYGKIASNHNLMVERLSNAGIKAPYIDCEIMGMRTKTGKGTIIVMDAFDPANPKPYAERMKEIEHLEAVTFDVPDNKLLRFVRLTHSKIKSIWEEMEFQNNKAGETIWEGFVMKSLNDGKYPFITKPSYCSYEWQKERIRS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209298_10002110

Overview

Ecosystem & Geography

Associated Families

Sequences