Scaffold Ga0209298_10002016

Overview

Basic Information

• Taxon OID: 3300027973
• Scaffold ID: Ga0209298_10002016
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12851
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (77.78%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000473	Metagenome / Metatranscriptome	1097	Y
F000671	Metagenome / Metatranscriptome	945	Y
F002060	Metagenome / Metatranscriptome	597	Y
F008814	Metagenome / Metatranscriptome	327	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209298_1000201613	F002060	N/A	MNLDLTTIIIAISAAILSGMGTAIIAGLNENKREKNRQKEREQDLLKIELKDLKIELYQLEKELTEWKDKYYKTIEELILIKSELENALRDLNSLDDHIN
Ga0209298_1000201614	F000671	AGGAGG	MDKVLCYSCNKTKNKLSLKKSVLVPINLLMCETCTISKFEPRWLIILAGRQLGSESVKDFVLKKRYVGTEITASELLI
Ga0209298_1000201616	F000473	N/A	MYIDKSKDHFKYGINQWNGEPNKPVFYTQEMAKALRGISKPVNNLQMDVVKYPEFLALRLYEDNFIQFEGTKKEMVIEYVSKVKKLIESYGVRCELEGVPSERVLR
Ga0209298_100020168	F008814	GGA	MANMTVLEEIIKEIGEELYQKWYNGLAIEDRTEESSKAMATNAGETAVWVIQTFMNKFNAAADELKDT