Scaffold Ga0209298_10001862

Overview

Basic Information

• Taxon OID: 3300027973
• Scaffold ID: Ga0209298_10001862
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13489
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (59.09%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000468	Metagenome	1102	Y
F002162	Metagenome / Metatranscriptome	588	Y
F004599	Metagenome / Metatranscriptome	431	N
F005587	Metagenome / Metatranscriptome	395	Y
F006539	Metagenome / Metatranscriptome	370	Y
F042333	Metagenome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209298_1000186210	F004599	GGAG	MAFNLSEYEDVATLNKWFILNFPSGRSDISVISHDAVNGYILVQATLWRDSKDEQPCVSNIAFGSRESYIQNMKKFYVEDTATSALGRAIILLKGSDKTATKDDMRKVESEPIKNIYGKSGNSQIIEMALRKSFADDAKPTSEPTTWTVGDVAEALSTKPKQQECSHGLMILKEGTAKTGRPFYGYVCSAPKGQQCDAKWAVTAANGSWFFREEE
Ga0209298_1000186212	F006539	N/A	LPLTQETGERMIETTTGWLVLYSVLGYFIVWGIFSTIKENYGQTMYWRGRKDGYDMHRRITDAKRDQVFDYDKQN
Ga0209298_1000186219	F005587	N/A	MSDLVKAIRLLKPNSQFSFNNDDYSTIKWDVLDGDAPTQKEIDAAIKKIKADEITEAKAKEIAKAAILDRIGLTADELKTILG
Ga0209298_1000186221	F000468	AGTAGG	MTAWSPDWKLTVAGVDYTDIAISDIDHQAGRSDIYQQPNPSYIQINFVALSGQTLPFDINDSLSLQVKNTAGSYVNIFGGDITDITVSVQATGAISTVVQYSVLAMGSLVKLAKELYLGTISQDEDGNQIYDLLSSVLLGTWNDVPAASTWATYDATETWANALNLGLGEIDTPGLYTMENRAASVDTIYNIASIIANSAFGYLYETNSGDIGYADADHRQNYLLINGYVDLDANHALGQGLSTITRSGDIRNDVYINYGNNFGSQKTATSATSIAIYGYKAESIQSVLHSAVDAQAVADRYIAQRAFPQPAFQSITFAITNPEIDNSDRDNLLGVFMGQPLNIQNLPAQISSGEFEGYVEGWSWSTRFNELFLTINLSPVAYSQVAMRWNTVPIGEAWNTLSATLTWEYATIVA
Ga0209298_100018627	F042333	GAG	MDGYDTADGFRVYQCLKCCAIGTKNLAEATDTQEPVQRCDQYGHWMFVDQPCHSCLLIAS
Ga0209298_100018628	F002162	GAGG	MLFLSFNQSDSIVPNYEYACDREGSSIVLDLPMQHEIPFCQVCGFELTRVFTAVPAIFKGTGWAGKSGQV