Scaffold Ga0209298_10001647

Overview

Basic Information

• Taxon OID: 3300027973
• Scaffold ID: Ga0209298_10001647
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14428
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (22.22%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium Tous-C10FEB (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F082694	Metagenome	113	Y
F085382	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209298_1000164711	F085382	N/A	MSIYDTFLPDFQIVLADIGVPATVGSDLFLVGLSRPMNTPRFEAGGFVDQKMWTVRFAAATAPWTASDGRVGGQVATVVSGVPAAFLAEGKKLTVNGQVLRIKGQAYKQASAVIELDCIDDNQ
Ga0209298_100016479	F082694	N/A	MGTKSARQIIEAAIASHLSAQTELSGMSIYTGDGADTNVLPKAIVLCDSARAPNGMPQGLGNYSCGTRITVFSSADDNTLVEHRARCAAVAGAMQDLAAIQAIFVAGGDALCYDVTPQSEDEGVNERSWASVFGYDILIVVNPV