Scaffold Ga0209298_10001302

Overview

Basic Information

• Taxon OID: 3300027973
• Scaffold ID: Ga0209298_10001302
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16330
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (79.31%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014015	Metagenome	266	Y
F017479	Metagenome / Metatranscriptome	240	Y
F048985	Metagenome / Metatranscriptome	147	Y
F050367	Metagenome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209298_1000130215	F048985	AGGAG	MPYTTQVTVGTTPTLILAANRADQVVSLHSSSGIIYIGASTVSTTTGYRMDNGDKITLQLSDNEALYAVTSSGTATMMVYANIN
Ga0209298_1000130216	F017479	AGGAG	MKDIKVAAGSWARAFLVAVLSLAAAGVTDPKALIAAGLSSCLPPIIRWLNPNDHSMGISA
Ga0209298_1000130220	F050367	AGG	MIINSLTIIIVAGFSFAIYAAFRLGQESGYDNGYCEGRKAVRKYYEQVGK
Ga0209298_1000130223	F014015	GAGG	MGEMVIFDDGTATILGEQFSEPQDIVIYCDLCNEPVAITPEANDEVFLTCIKCHAVSHIALKSSKEADAEPAPEA