Scaffold Ga0209298_10001037

Overview

Basic Information

• Taxon OID: 3300027973
• Scaffold ID: Ga0209298_10001037
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18442
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (17.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000962	Metagenome / Metatranscriptome	820	Y
F015867	Metagenome / Metatranscriptome	251	N
F093350	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209298_100010371	F015867	GAG	MKYKVTYYDYDSDSYLTKDLYWMASYRGSFDFVPVDDGPKENWKGFSISGSGVNVFYNDKGMNITVDGFQEMKSGGYGKTTTVIQSVN
Ga0209298_1000103727	F093350	N/A	MLTKDQAFDISEFIYKNSHESLWRVGDNLGKILNELSVNPDKDQIIGKFVAKNGAKTVYTLNNAIFNLVEQLMKIEETAESIQHE
Ga0209298_1000103735	F000962	N/A	MNIHVPEEIKIKYPQYEFRGKQREINNRIVIEAYNPVTEQSFYYSFEEDFFWIAGQIPDYKLQKV