Scaffold Ga0209298_10000987

Overview

Basic Information

• Taxon OID: 3300027973
• Scaffold ID: Ga0209298_10000987
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18892
• Total Scaffold Genes: 55
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 44 (80.00%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000325	Metagenome / Metatranscriptome	1296	Y
F006543	Metagenome / Metatranscriptome	370	Y
F008812	Metagenome / Metatranscriptome	327	Y
F012108	Metagenome / Metatranscriptome	283	Y
F057320	Metagenome / Metatranscriptome	136	Y
F061803	Metagenome / Metatranscriptome	131	Y
F074805	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209298_1000098719	F008812	GAGG	MIQWVGILIAVLGLAYNGVKDYQKGDIKLSRLPQKQVLTKPVYPVQYCLMAYDPNVNKVFYLHENGQWHDYAPQQRRYEATPQPYQDQGKTAVASSYGSQGTPSHRYGQSPQANPNPIR
Ga0209298_1000098721	F057320	AGGA	MSYVGLYDDAGSKNAFYIIKDKKIGRKRVGFKEFESEKEAKFAHRVQKHLAQFDLAPMVYGDVGMIRRHDGELTAHGYLTEVARPMPECHDDEYCDGECFQSECKNGQMIQFVVDKLDSMGLSYNDAHKGNFGYIRRKGKWVAVVIDLGIESFTEWDEDIYGQFDYDADEDVDCYGVCNCVHCQKVRQNLQD
Ga0209298_1000098722	F000325	AGGAG	MKTADGNDKLGKGCIVVSRPVGDTCPPDCDYLGNGCYAEATENQYKNARTAGFANVITEKNKIRAMILEAKRREKSIRWHERGDWFLNGELDLDYVANVTWACESILADGDSLPDMWFYTHIYDSRLVSLEKYMNVYASVHDDNDMGEALAQGFKLFAWCDSDMKIAPKRPKSKAKAEAWRQALPKLVVLNATKFVVCPEIRRGRSEITCTGTKDSISCDLCVRGLANVLFPAH
Ga0209298_1000098725	F006543	GGAG	MKKFSFVIDVVADELDRDSVVDSIRDCLSGSLPGDVHANVKAGEVKAFSEQGYKVWRARVTGVTAEQAGDAHDGKVEKETAEVVA
Ga0209298_1000098726	F012108	AGG	MSVREALNMVSNGCNLDMFEKIVCALEVALGVNQRRMVTITGGLTLDNRIHSIKAIRLHTGWGLKEAKDWTDYLVGGWHYDKFVPAKSGAKQSITLKTPEAAEALLRDLVGLGCEGFLS
Ga0209298_100009873	F061803	AGGAG	MEVELSKQEAWKILDAISAYKEDYTVTGAVSKTYDNITKKLKEVVKE
Ga0209298_1000098736	F074805	N/A	MDVVIGFQFERVSMNDAFLFGSIFAAAAVAVVGFVFYSVYGGSKASLANAQEGQVFNFVYEQPLHGTHERFLAKVIGKQTLTADQIKRLNRKSRYRINDPEFVRTTNLVTCRTADGKVRNFYAERVTKCRKPLLAGALFKSGFANLF