Scaffold Ga0209298_10000951

Overview

Basic Information

• Taxon OID: 3300027973
• Scaffold ID: Ga0209298_10000951
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19261
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (14.29%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (33.33%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012871	Metagenome / Metatranscriptome	276	N
F019140	Metagenome / Metatranscriptome	231	N
F021113	Metagenome / Metatranscriptome	220	Y
F027518	Metagenome / Metatranscriptome	194	N
F039140	Metagenome / Metatranscriptome	164	Y
F041764	Metagenome / Metatranscriptome	159	N
F041777	Metagenome	159	Y
F045753	Metagenome / Metatranscriptome	152	Y
F071250	Metagenome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209298_1000095113	F012871	GGA	MLRSASTTTLTTTQRVDRAERESAFVADYDLPAFVKLCSKVCAMYGIALPEAQLLQMLHEFIGKHFRWVTFEHFNLAFELNAANELSKKCEHFGALSVSFIGDVLTHYKPHRDKANLQIQREIAESKEQESKQLKEKEMAVNDDSWRRMLAEDLHNYKKGKYTVIEIRAVSLMRWLEEAKYITPDTFTDEEYKLCKAKARKTIYFEQNLNKPMVERMSDRKRQLLKESIAFEGMRELYKLYLSKQ
Ga0209298_1000095118	F019140	N/A	MKQTPLYETLKMTYEREREIVNSIATYFQQGKILGDILLELSQRKDLNAKEKIYLALMIGSMMSKNGTDGAEQN
Ga0209298_1000095119	F021113	AGGA	MNRNILAAILLFIGTSILWLVICWNIWGCTGKKSVQESVQEQDSVINYNAGEYQMLLEETIELKEQLAYYENAQSSAKTAYKRNRSSIVVRDTIYRVDVIRLVNSCDSVIASDSLVIDNLKEQLNIEERKIDNLQEVVVAYEQKEDVLTEQINTLNVEKKKLEKQKKRRNHALIVTTSVAVLSTFVLSILL
Ga0209298_1000095121	F039140	N/A	MREWLKSLLTSCSKVSSKRVIAIFVVINLIVFSYVATFTHYVCPIAMFDTLALLTGGMFGGTVIEKFTKSKANGGSSQDNSENNS
Ga0209298_1000095122	F027518	N/A	MNTETEIQLIHEQLQEMDKKIDRIYNVLIGDDQMKIEGLVSKVQKHDKYIQNQRLQVARLGGIATAAGVVGGLIVQLVLKAL
Ga0209298_100009513	F041777	N/A	MKKTLLYIAILFAGMLIAGTIDESTRQLEQQPNNTISK
Ga0209298_1000095131	F041764	AGG	MNIEAGGFLKLELFNDDATLFLNALTKITNDGGKMGFKSYGLTDDEIKTLNAILDSLG
Ga0209298_100009516	F045753	N/A	MKSFYCPRVSYCFTKDDMNTLNERIKAIALNYHEEETGWFEVDENQHLVFIDDQDNMYTIHLRGRFWRADEPNFDLEFVRLEKDGISFHFDIEMFDDKV
Ga0209298_100009518	F071250	N/A	MKKLVTLEKKVEKLLKQAKKYRNDNKALCVKIWQDQFAERKDITSNFFAMYESGKYVTADNITRIARLVKQHNPELRGTNHDDNKKKEQLIKPLLKK