NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209298_10000834

Scaffold Ga0209298_10000834


Overview

Basic Information
Taxon OID3300027973 Open in IMG/M
Scaffold IDGa0209298_10000834 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20662
Total Scaffold Genes46 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)35 (76.09%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C403(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000368Metagenome / Metatranscriptome1223Y
F029734Metagenome / Metatranscriptome187N
F053803Metagenome140N
F064418Metagenome / Metatranscriptome128N

Sequences

Protein IDFamilyRBSSequence
Ga0209298_1000083420F064418N/AVYEGILVGKPRPTEIRLVAKLLDPDAENSEDAAALAIEIIEALDNSRLKRESFIVVAKLADWVPLQAWGEFSTRLQAEKFFPHLSAPGPDTGGKGAIARLENPDDLLKRIGAQ
Ga0209298_100008343F029734N/ALFDKGGRIKLARHFTERNTMRTVETKALVGVVKNGVVHVSKPNDKRIFAKVRITTNTAKSSKKIEAILSAFKAYPNFTTVLDEIQKVEPNAYLTLKGGRA
Ga0209298_1000083433F053803AGGAMAIDIELTENEIMDALLFIHRVRENKKQYEVVDKKFDKNNSSYSVNLMGQLGEMACGKGLGLQVDRSISPSGDNGHDLSTPLGKNIQVKTSTLDKLIFNAPELFVSDYAVLVQFFGDKQLPHVDSRFSILGWTTRELFLANHYKHDYGYGIRLVMDADQLQPIEVLINEVSRL
Ga0209298_1000083443F000368N/ALAGSFYLEEKTMNAKFQAVTLSWFRAAASAAIALYLTGSTDLKTLGMAALTGFLGPVLKWLDGSSTDFGRGAE
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