Basic Information | |
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Taxon OID | 3300027973 Open in IMG/M |
Scaffold ID | Ga0209298_10000834 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 20662 |
Total Scaffold Genes | 46 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 35 (76.09%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C403 | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Simoncouche, Canada | |||||||
Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 2 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000368 | Metagenome / Metatranscriptome | 1223 | Y |
F029734 | Metagenome / Metatranscriptome | 187 | N |
F053803 | Metagenome | 140 | N |
F064418 | Metagenome / Metatranscriptome | 128 | N |
Protein ID | Family | RBS | Sequence |
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Ga0209298_1000083420 | F064418 | N/A | VYEGILVGKPRPTEIRLVAKLLDPDAENSEDAAALAIEIIEALDNSRLKRESFIVVAKLADWVPLQAWGEFSTRLQAEKFFPHLSAPGPDTGGKGAIARLENPDDLLKRIGAQ |
Ga0209298_100008343 | F029734 | N/A | LFDKGGRIKLARHFTERNTMRTVETKALVGVVKNGVVHVSKPNDKRIFAKVRITTNTAKSSKKIEAILSAFKAYPNFTTVLDEIQKVEPNAYLTLKGGRA |
Ga0209298_1000083433 | F053803 | AGGA | MAIDIELTENEIMDALLFIHRVRENKKQYEVVDKKFDKNNSSYSVNLMGQLGEMACGKGLGLQVDRSISPSGDNGHDLSTPLGKNIQVKTSTLDKLIFNAPELFVSDYAVLVQFFGDKQLPHVDSRFSILGWTTRELFLANHYKHDYGYGIRLVMDADQLQPIEVLINEVSRL |
Ga0209298_1000083443 | F000368 | N/A | LAGSFYLEEKTMNAKFQAVTLSWFRAAASAAIALYLTGSTDLKTLGMAALTGFLGPVLKWLDGSSTDFGRGAE |
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