Scaffold Ga0209298

Basic Information
Taxon OID	3300027973 Open in IMG/M
Scaffold ID	Ga0209298_10000410 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027973 Open in IMG/M

Scaffold ID

Ga0209298_10000410 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	28420
Total Scaffold Genes	41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (36.59%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

28420

Total Scaffold Genes

41 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

15 (36.59%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (57.14%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F011222	Metagenome / Metatranscriptome	293	N
F019318	Metagenome / Metatranscriptome	230	N
F023103	Metagenome	211	N
F025459	Metagenome	201	N
F034182	Metagenome / Metatranscriptome	175	Y
F046247	Metagenome / Metatranscriptome	151	N
F048162	Metagenome / Metatranscriptome	148	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209298_1000041015	F023103	GAG	MADYAEIREVTIPDAVMLNARLLCVELARRTQPFGEEQTSGTIRVKNDIGKIIKNTEQLDEYADRVGSQRIKARLNVLIKSGRFDIVETILRNIGFLNKWTGMEVIGATKMKSVHNEARNKTTGRTKSRGSKLFIASDSDKETYISEVQKRVGISKGGWADCATQLKKVNKGGLLAGFPTWVKKAMKSGSGKVQDMTGDIKNPRVFLTNNVPWASNVIPESEQDNATAVVVVKMRNQMNQILKKRQKNLVET
Ga0209298_1000041019	F011222	N/A	MPLAPRLKGAAFLYMDSNKKFFHTINLKAAVALATMGFKMNFPPVTRLVRTDGKESTEFWFEGENSKGQDASQVYRQMTKDGDELEAKDPENPLCYIRAALANRDVLVDIIRNTPRLIEIEHNGKRIAISENASDKTKQEMTRFLK
Ga0209298_1000041022	F046247	N/A	MIISPNEQGWAFDESTAWKLVYDGSTIIFFDETEKSISTQSVLFVGTKDECEAEIARLGLVDVSAQGNDNGLDLHADA
Ga0209298_1000041032	F019318	AGG	MLASLLIATQGLMPSPTPLSIGVQGLLFIPVVPPINPIDLPGGGGREREERKVTIKVRGNRLVFSVANVEACAGSRIQVAGSSCFTNAGEAGLSISAKTTVLGSRNHAGVSRAGLSISSTFNVIGCEEENELEVYLMAQAAMALMGD
Ga0209298_100004104	F025459	AGGAGG	MKMTLEFDETERYEHEVACKGLDILILLDDIDQELRSALKHESGEFAKLDVETMEAVRAWIWEQRTSRNIPELT
Ga0209298_100004105	F048162	N/A	LKKRKQPTVESERTEALAEAKRLLSEHYDCGFTIVSWEQGGETMHGEFVFGNKYAVEGLAGDSFSILFPDTEEEEEDEEA
Ga0209298_100004108	F034182	AGGCGG	MDNHTFHTFVGTSAPAMAVLISFSEVEAWLRIASLLLGICIGAVSLYKMLKAKKS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209298_10000410

Overview

Ecosystem & Geography

Associated Families

Sequences