Scaffold Ga0209298_10000377

Overview

Basic Information

• Taxon OID: 3300027973
• Scaffold ID: Ga0209298_10000377
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29585
• Total Scaffold Genes: 51
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (23.53%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047677	Metagenome / Metatranscriptome	149	N
F066778	Metagenome / Metatranscriptome	126	Y
F070109	Metagenome / Metatranscriptome	123	Y
F072341	Metagenome / Metatranscriptome	121	N
F077297	Metagenome / Metatranscriptome	117	Y
F082692	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209298_1000037715	F047677	N/A	MKWLKSIFSNEGDASSKRVASILALLVCINLSYIGTFTDFKCPEYMFDGLLILAGGGLGLTVIESIFDKKKSNDTTGQDTN
Ga0209298_1000037716	F077297	N/A	MTQQAKTQIKAAAVIVVALSICITIQCLYIALKDSKKAIQGYERRADRATHVIDSLEATNVQRMQEIAQLNMQIEHNTQIYEANISAIDSLDRNGLKRAMRNLLSSLAGERYPGQSNE
Ga0209298_1000037717	F070109	N/A	VRDTLVSLTSSEVRSLLKLKAERDYLLEQNLLLSKSDKIASSVIKDQQKTIDEYSIANEQKAQQLVTVQQELDKQAARKESWRSAALIGIPISFVGGIIFNLLF
Ga0209298_1000037723	F066778	N/A	MNYSREPNWQKLKPEIDWDEQEEKLADKLNKYINKNNTVMNQQIVKQQKFVRTWNGPSGEIHYFDLVLENGEIGQIGVKDMNSPKIQVGATLHYTVEERTGPTGKKTTNFKMQNPMQYAGTTAAPSGGGNAYVPRKESPDVQNSISKSVALNNAVLFCKEQKGSKPGDVLDTAEIFLAWLKGEAVEAVQIKAVTNESADDEMPF
Ga0209298_1000037729	F072341	N/A	MSKELAASVQQSFNRSLSAEERAIAECISSPKLHSLNEQEFRELIAQAAVINSIKALPSDIEVTLLQQLTQNTYRSTSIKDWQNAFLYNAIGKDFERVEAFNLFSISFMADVLKRYEEYKAKVWRELNKALILPEAEIIRAEPVDPLTALHQDVDRWNQRKEIWVEISAPYNCQRLFKQGIYKKSMWEPEVWERFEDIAKQKVEAKFKASNKVILGESAQAEFDGLQKIELSRLIYIDIIKQINKEKS
Ga0209298_100003773	F082692	N/A	MKNPQNDIILSMTLLRSGVQGKSKEFKQAVGSYHAKRKVWQIRAINYTILITGIGLIALTIYSAL