Scaffold Ga0209298_10000318

Overview

Basic Information

• Taxon OID: 3300027973
• Scaffold ID: Ga0209298_10000318
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 32444
• Total Scaffold Genes: 63
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (20.63%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001732	Metagenome / Metatranscriptome	644	Y
F003904	Metagenome / Metatranscriptome	462	Y
F008080	Metagenome / Metatranscriptome	339	Y
F028094	Metagenome / Metatranscriptome	192	N
F080979	Metagenome / Metatranscriptome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209298_1000031810	F028094	AGGAG	MSQQLQFDFRSPEEIAKQRKISEENEKVLNDMFSNDDYVYNRYVDFLLDLIPFRWGWRAKNWPRAIKWWAKCKYQKIRYGVSDDDVYSLGYNIALFVLPRLKYFKKKGKTGIPCCFLPDNFHLLKDEEQTAAEEKGVKEMGDALDEMIFAFEYIIDGDKFCELPESLSFKAKDLDFNSEKSIEEKESWKQYMEKANELNDRKNNGLILFAKYYDTLWI
Ga0209298_1000031813	F080979	N/A	MQDHKPINMKKISAKEEKNYKLLKEGQDFLVGDLIHLVDDEYVKLNEHNRLLKEKVNKYNKVLRKL
Ga0209298_1000031819	F003904	N/A	MNNLVLNIKKYLFFALLPTGIIVILAISSLKDIEQGYARFRFGRDITLYLRKSTDQLTYLGAAYTATSDKKFLDQFNSHLKEREKYFNEEIVINKMLTQEELKEFRKGLDISNDLAKDVENAAFEKMDNKAFFGDKYLDYKKKIYDNINSFRGLINDSSEKIIKDEAKLLNIYLYCLAGIVLALVYLIKQESFTPTKNKPIKKKPIKKKKQ
Ga0209298_1000031821	F001732	GGA	MKRLLILFMGLLLSGCFSTIKPAKQIDDNQKAIAKEEKKVDATVVEIEKNDKGKKIQTSALAQGIQYSLNQVTNPPIQVDTAKSLNERVVSIVGSPHIDEINRIKATVDLLNSAVEEERKKGLELLAKRDELINKLQKEKVELNEQYDDQLWQLTDKAKEVAKEADQNKAVLDSMSGMFGLNAVFWGLKKFVFSALTAILIFTVVFVILRLLATVHPAAGAAFSIFNMLGSSVISVVKMLTPKAFEMSNFATKENVEEFKSPLVKIVDVIQELKEKQKESPDRVYPLSEILKRFDKEMDSHEKDLIEEILKEQKWIK
Ga0209298_1000031828	F008080	N/A	MLKIQIWMRGTMEYSQDTIPGPTIDQTQEQFEEAFKESDDCYWGGDVYETCPYFDNDKRDSIDVYLGGDDNISNDEKPVFVTSNWEDFEFEKGGRSNYVPEAPDKLGEVNIWWSHDMKFNYVYFWNNFTEFDPNKLKIQYGVDQKGNKYLEDLIYDGEFPDDYNDFGDTGYGYNGPEFVYHPEQKFAEEQED