Basic Information | |
---|---|
Taxon OID | 3300027973 Open in IMG/M |
Scaffold ID | Ga0209298_10000197 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 38002 |
Total Scaffold Genes | 58 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 44 (75.86%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
Associated Families | 6 |
Taxonomy | |
---|---|
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Lake Simoncouche, Canada | |||||||
Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 2 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000934 | Metagenome / Metatranscriptome | 828 | Y |
F001991 | Metagenome / Metatranscriptome | 607 | Y |
F002085 | Metagenome / Metatranscriptome | 595 | Y |
F054870 | Metagenome / Metatranscriptome | 139 | N |
F058557 | Metagenome / Metatranscriptome | 135 | Y |
F062760 | Metagenome | 130 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0209298_1000019716 | F000934 | GAG | MATLNQILAISESVGINDHRFVGQMLSRNQRISTSEILTVQPFQFDMKPMNYLLYSQNRSLLSNLREVDRQFESYLNFGSTGWWNYIAYQGDMSSAEISACEYEITSANKTIVLGSLPTMGSTEYIVKTGDFLQIDRYAYIATSDVVRGVGSTVSIPVHRTIMTTLTSPMEAVIGQYGITQSLGGDTYIGVTFPVILQEYPAYTFVPMTNDSFISWSGSFKAIEAVL |
Ga0209298_1000019717 | F002085 | AGAAG | MNEIAPIQNTNNIRMADFVRLTTANGVYRFATTPSVLTIPAVDALPFDALGSLVKVNDVQRDIKSTANETTVTLVGIDTALLGFVLGHDIKGSLIEMWHGFFNDQNELITTGGTGGLYKFFTGYISSFSISEQYMEEARAYVGVITASASSIQIILQNRNAGRYTNDNAWQFWNNGDTSMNRVNFIETINYSFGKDI |
Ga0209298_1000019723 | F001991 | AGGA | MAIFNKNTLQQVSGFDNEIIAGELVYNQKTFWNLAFNSDGTPVDLTDATIDATIIRRSVTNIHDSRYGLTFDIADYTPPPDPVSLSIENVDGAAGTFTLVIDESTWDVIDSDPQLDINAENCVGFSGRIKIGFPSSGSTPAQDMIIFLLFLVRSDGVVN |
Ga0209298_1000019737 | F054870 | AGAAG | MSKLFTALLIALPIMAIGGESPKLCYNWVEDKYNYAPKDAKLKYNWTADKYEFVAPNSKLKHNSQSGNYEYVQTQIDPYKSEIE |
Ga0209298_1000019750 | F062760 | N/A | LEELIKQGKTPKVTIKEKADSNRSLEANKFLWGRLYKSISNFTGYLPMEVHLLCGHLFLSEQKTIGEVQVPYVRSTTDLTVEEFSLYIQQIESYFSQLGWSNDE |
Ga0209298_100001978 | F058557 | N/A | MAIKRYENVDVNDLTFGTDAYGQYTTTITKKFTTRPLVSDVKNSLAITERYRVYQDLIQFTMNYTPWMKDVVDNQNLYSITWRAKDWRITDVLESNDRMSVTLMCYRSDPETKV |
⦗Top⦘ |