NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209298_10000197

Scaffold Ga0209298_10000197


Overview

Basic Information
Taxon OID3300027973 Open in IMG/M
Scaffold IDGa0209298_10000197 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)38002
Total Scaffold Genes58 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)44 (75.86%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000934Metagenome / Metatranscriptome828Y
F001991Metagenome / Metatranscriptome607Y
F002085Metagenome / Metatranscriptome595Y
F054870Metagenome / Metatranscriptome139N
F058557Metagenome / Metatranscriptome135Y
F062760Metagenome130N

Sequences

Protein IDFamilyRBSSequence
Ga0209298_1000019716F000934GAGMATLNQILAISESVGINDHRFVGQMLSRNQRISTSEILTVQPFQFDMKPMNYLLYSQNRSLLSNLREVDRQFESYLNFGSTGWWNYIAYQGDMSSAEISACEYEITSANKTIVLGSLPTMGSTEYIVKTGDFLQIDRYAYIATSDVVRGVGSTVSIPVHRTIMTTLTSPMEAVIGQYGITQSLGGDTYIGVTFPVILQEYPAYTFVPMTNDSFISWSGSFKAIEAVL
Ga0209298_1000019717F002085AGAAGMNEIAPIQNTNNIRMADFVRLTTANGVYRFATTPSVLTIPAVDALPFDALGSLVKVNDVQRDIKSTANETTVTLVGIDTALLGFVLGHDIKGSLIEMWHGFFNDQNELITTGGTGGLYKFFTGYISSFSISEQYMEEARAYVGVITASASSIQIILQNRNAGRYTNDNAWQFWNNGDTSMNRVNFIETINYSFGKDI
Ga0209298_1000019723F001991AGGAMAIFNKNTLQQVSGFDNEIIAGELVYNQKTFWNLAFNSDGTPVDLTDATIDATIIRRSVTNIHDSRYGLTFDIADYTPPPDPVSLSIENVDGAAGTFTLVIDESTWDVIDSDPQLDINAENCVGFSGRIKIGFPSSGSTPAQDMIIFLLFLVRSDGVVN
Ga0209298_1000019737F054870AGAAGMSKLFTALLIALPIMAIGGESPKLCYNWVEDKYNYAPKDAKLKYNWTADKYEFVAPNSKLKHNSQSGNYEYVQTQIDPYKSEIE
Ga0209298_1000019750F062760N/ALEELIKQGKTPKVTIKEKADSNRSLEANKFLWGRLYKSISNFTGYLPMEVHLLCGHLFLSEQKTIGEVQVPYVRSTTDLTVEEFSLYIQQIESYFSQLGWSNDE
Ga0209298_100001978F058557N/AMAIKRYENVDVNDLTFGTDAYGQYTTTITKKFTTRPLVSDVKNSLAITERYRVYQDLIQFTMNYTPWMKDVVDNQNLYSITWRAKDWRITDVLESNDRMSVTLMCYRSDPETKV

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