Scaffold Ga0209298

Basic Information
Taxon OID	3300027973 Open in IMG/M
Scaffold ID	Ga0209298_10000172 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027973 Open in IMG/M

Scaffold ID

Ga0209298_10000172 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	39944
Total Scaffold Genes	56 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	46 (82.14%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (100.00%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

39944

Total Scaffold Genes

56 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

46 (82.14%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001094	Metagenome / Metatranscriptome	780	Y
F010232	Metagenome / Metatranscriptome	306	Y
F010612	Metagenome	301	Y
F011647	Metagenome / Metatranscriptome	288	Y
F015719	Metagenome / Metatranscriptome	252	Y
F022871	Metagenome	212	Y
F058945	Metagenome / Metatranscriptome	134	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209298_1000017210	F010232	AGGAG	MRSREELLKIKEAFAYAMMDMLDVYDELIGNTPRKLWDGEQPEPTVNDLVKNEVESNG
Ga0209298_1000017212	F010612	AGTAG	MLSLSDTLVNEPPVWEHTVWIMAKVRCRTTHVDIDRAGDEALEDPSEWHVLEFDTGIKHSQEIVRVR
Ga0209298_1000017219	F015719	AGGAG	MTMYYTEVDGTEPTVSLQVGGTKYTFTNDSLTKLVEEKESLRTELAQVERKFKSAQFDVKEFFQSKYETDSDEIVCNLDDVNELLISIGSEQLTKSWSATITITATVTGIEAPNAEAAKDMLDDGFELNMTVDGDVWIDDLTIESVYPEA
Ga0209298_1000017226	F022871	AGGAG	MSELENAWDSDEEFWDFVGQNRRMVGLAISDGQGLDILNSLRDVYLTIEKEPDSAMRMLTLLGTVIYASSIGEGKQFTDEIQIVAAMEQFDTNIKEILDEESR
Ga0209298_1000017233	F001094	AGGA	MNTTKLKAIAVTYIRAAVASVIALYLAGTTDLKTLALAGVAAVAGPVLKALDPSAPEFGRTNN
Ga0209298_1000017249	F011647	AGG	MSSGQRKRHDGWNKSIMRDGMIVILRKDGSEKVRLDPKTKEIIKGSK
Ga0209298_1000017253	F058945	AGGGGG	MECDHKSKVLDWAYELKDGQMNQHVSLYGCTECDATSPKPFISKEEVYVADHSNCHIDPCFGCKAKGLQLSTGDANGRAAMPRRKWEGELEAYRDARRQGIQPAGTTMEKIVAAEKASENLGRAYNAEKDPNAKQIDKKTAKVMTELGA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209298_10000172

Overview

Ecosystem & Geography

Associated Families

Sequences