Scaffold Ga0209298_10000166

Overview

Basic Information

• Taxon OID: 3300027973
• Scaffold ID: Ga0209298_10000166
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 40609
• Total Scaffold Genes: 61
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 54 (88.52%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006467	Metagenome / Metatranscriptome	372	Y
F011388	Metagenome	291	Y
F026257	Metagenome	198	Y
F042878	Metagenome	157	N
F050332	Metagenome	145	N
F061658	Metagenome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209298_1000016613	F050332	GGAG	MTENKRGPQVAVDVWLSDKKEPKEKTFQSGTTAIEFFASRSTDEYTTWRALPKEGKPEAPANKYVYVTLTVFDKKTQEHLYKIYYKVQEARAKNPNEKRPNLHVTGELRNARIYEGKSYEDITVRDCSPLIWTPAEQA
Ga0209298_1000016629	F011388	N/A	LKQLANEVAVDLARGRSDIEFFARRWLGIEGNPGQVAWWKSCSERDESGYRPKYITTVVSAGNRAGKTMAMAVVCFHHALYKLGLPNPKYGDSKSHLEWLDSPYEWFHIGIQQETAELVFREIETILTGQHPAQKGRGCPMVTELGKIVETTKKYRGEYPWIKFNPIVGGASIHFRTTQDRAKALLGKDMNGISFDEAAFEPHLLMIYQEVLNLRRLSTGGPLHFIGTPTEGFNEYADLWEKGNPDNPERDSKFISFRLSTRANIGYGLTQENFDDVVRQQAEYLIPQNIDGFFIEARDAFFWSQSIQAVFKSGVEELGPTRHHKYVQGVDPGISHDATWAITLDITDRKLLRGTRIRKRGGKQSISAVVNMVREGHLLYQQDGAYCTTIVDSTGLGGRLFQQEFSIIRPLRGFDFGGTKAKKVELLNDLKAVLDKGQIELPTGGAWDEMRRQLLTYKLDDKKLEQDAVMALAIAVRHALRNPEKPVNDPVFTYFGVSD
Ga0209298_1000016634	F006467	GGAG	VITKIINDLVGGSWTILGLLFAVVVLPEGATRDTMASIFTGLTLVWFLTGPLRWKD
Ga0209298_1000016638	F026257	GAGG	VTDLAPVLTGCHVCRSPLVEAINKKMRDGMSDVQLSKWLADAGHYISRITLGKHKRDHLTEDHEHKRISAINHLRKQKKTIKATGDLAMLVRDYVHSAVQDGDLTPTLAEGLRAQEMIDRRQEKGADREVALQLAGILGGGATYQIIEATEIKPLGVGESEL
Ga0209298_1000016639	F061658	GGAGG	MPVITEPAYLDEQTGMLTEIVRDAETGEIIGKNERMPEDVPE
Ga0209298_100001664	F042878	GAG	MKSTPKTQDFEQYFTTLYDEAKRILVERQRQYGPANIESLGVPGVFSRMSDDKMSRVKKALNGSVVKGRVVLSDASLAELQHPSVRDALIDSANYALILLSLIDGQWSHLQVDYENPDAG