Scaffold Ga0209298

Basic Information
Taxon OID	3300027973 Open in IMG/M
Scaffold ID	Ga0209298_10000164 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027973 Open in IMG/M

Scaffold ID

Ga0209298_10000164 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	40767
Total Scaffold Genes	58 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	50 (86.21%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

40767

Total Scaffold Genes

58 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

50 (86.21%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F070923	Metagenome	122	Y
F072014	Metagenome	121	Y
F082075	Metagenome	113	Y
F090310	Metagenome	108	Y
F098561	Metagenome	103	Y
F102439	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209298_1000016416	F090310	AGGGGG	MSSVLRGIADSLAIGLQSVTWDITSTVVERKNWANIDVDAMSVPRVFVVPGNADVSRLSRQIMQVDYTVTIFVGRHVTTDAEVDGMLDLADSVMLQVRAHSFGQTVTWPAGVTSPQTVAIDLNPDDALTERNVWRAVITATYRVFESNVLPTV
Ga0209298_1000016420	F098561	GAG	MAITLGKDCTISLDDGTIASARSVTLTESARTIDVNPFGSRYAAIYSTGYECTVNVEFNDATDLGSAFTKMHTGGTFEVRGGAGGFSFFAVLTGISETESIDGVATFTLEGKMTDTSLKR
Ga0209298_1000016435	F070923	GGAGG	VGDAPAGMLAHLRGRLRAEIGPQAVKAGRAFDEFVDAICRCWNAEHWTKLARTQPESQMLAVMDAKVLIAKVGEDVEAMWGSSPELRTLYADVGHQAVEVFARLWFESMANRTWMRQACKEARRT
Ga0209298_1000016436	F102439	GAGG	MTDDDLPPAKGKRRRMPERLTPPMRKFLTKLARIGARVTWCIELLYDPSKGGQGELSDRARAGDHTLVLDTVREVEYRASQLAEDIEIFMTPPEKLPSEPGKPARVEAMARRQAAKLHIF
Ga0209298_1000016438	F082075	N/A	MHAILRFRLPDEQAEFDAAMQGRDAKSAIWAVDQHCRSILKHGEPSEETRRHLEGIREMLRERPGLLDD
Ga0209298_1000016451	F072014	GGCGG	MKPEWHYLPPPLDVVQALMQRAWDDDISDDDRILLETAAKTLEVTLDRCIRLASVIERTEVGL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209298_10000164

Overview

Ecosystem & Geography

Associated Families

Sequences