Scaffold Ga0209298_10000101

Overview

Basic Information

• Taxon OID: 3300027973
• Scaffold ID: Ga0209298_10000101
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 49162
• Total Scaffold Genes: 71
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 65 (91.55%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005450	Metagenome / Metatranscriptome	400	Y
F042220	Metagenome	158	Y
F057193	Metagenome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209298_1000010121	F057193	AGGA	MVETFDYKQILTWINNVWAKSLAAVIMFFVGIYIGQVQVEGKVVGDCKYSGAFRVNHEAFVCQRRI
Ga0209298_1000010153	F042220	AGG	MDNFIQKQIEASERLYNIMLADHKARFEKIAEVYDLSASLQKKLNERDEEIRKLKRQLLAYESIERM
Ga0209298_1000010167	F005450	AGGAG	MDKKQVKAIADKEVKVHEKKMHKMAKGGVTGEAMRKVGRNMARAMNQKSTGRGR