Scaffold Ga0209298_10000053

Overview

Basic Information

• Taxon OID: 3300027973
• Scaffold ID: Ga0209298_10000053
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 66664
• Total Scaffold Genes: 95
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 81 (85.26%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009319	Metagenome	319	Y
F023296	Metagenome / Metatranscriptome	210	Y
F077045	Metagenome / Metatranscriptome	117	Y
F093219	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209298_1000005318	F023296	GAGG	MAKNNKPAQAYDEPHKMSGEQTNVNTYSGYEAGAKVMEKENISVGGISKGNYAPINPYGVGVMRGYGAATKGRKISGKMG
Ga0209298_1000005342	F009319	N/A	MIENLVKPVPLNNDVAVIKILQLMGQLTPEDIEHVLNIVNQVYKVVGQKEE
Ga0209298_1000005367	F093219	GAGG	MNNEPVVWTACLDCGKRVTGDSIHTCSPQLKTLTDEEIIEVWNAFERTDNIPIIDFARAILRKAQEK
Ga0209298_100000538	F077045	AGGAG	MATYTITLSDAENKALGVVAFSQDDWIQNAVHERCRIAMEEIIAAEVQRLLGEGKSITGSKDDIVIAAPIQSAAERQAEAQQAQAEQV