NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209298_10000029

Scaffold Ga0209298_10000029


Overview

Basic Information
Taxon OID3300027973 Open in IMG/M
Scaffold IDGa0209298_10000029 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)83754
Total Scaffold Genes107 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)78 (72.90%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000808Metagenome / Metatranscriptome882Y
F003965Metagenome / Metatranscriptome459Y
F023275Metagenome / Metatranscriptome210Y
F029107Metagenome / Metatranscriptome189Y
F056558Metagenome / Metatranscriptome137Y
F100416Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0209298_10000029100F100416AGAAGGMGKVKSTMMDILECDSCYGYGWQFAGNDVDYDVWACECNPYNISADELIDWKLN
Ga0209298_10000029101F000808GGAMEYTYSLTTSYDGKLINTLRVSDMLEAVKAWDKCVDYGFAKEYATYNLSDPTGKMYTKTFYTNGEVVIK
Ga0209298_1000002979F029107N/AMTTHSLTTLSNTSATRLTPNGLHSGMDITIQNVDSSAYVFLGGEGVTASDYGYRLAPGSAWSVELPGLDAIYAITDTNGSKVALFKMGLE
Ga0209298_1000002984F056558GGAGGMGILDNFENAWDDDFQFESKPISEKDAVGREKFWEDLGRPISSDVENDGLALKIFKDQCCDQCNCN
Ga0209298_1000002985F023275N/AMVIVNNIESSMADDDGMPSKKVTDAIKQMFEDPEYNHLMERLKYMEDNGI
Ga0209298_1000002992F003965AGGAMNSNVIIQVCKSHVPNKSAISDVNDEQFTFCEICENNIERWYNDTDPERLPMWTSWKVSK
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