Scaffold Ga0209298

Basic Information
Taxon OID	3300027973 Open in IMG/M
Scaffold ID	Ga0209298_10000006 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027973 Open in IMG/M

Scaffold ID

Ga0209298_10000006 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	131294
Total Scaffold Genes	131 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	17 (12.98%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

131294

Total Scaffold Genes

131 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

17 (12.98%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F017300	Metagenome / Metatranscriptome	241	Y
F031491	Metagenome / Metatranscriptome	182	Y
F066792	Metagenome / Metatranscriptome	126	Y
F093878	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209298_1000000624	F093878	N/A	MSENQITEEQQVPTKEELINFFKEQIEVKKVQLELQELNTNLAVAKAEELKALGFIAQMTTQPGQKSAQPEGQPHTLTQEDLDNNPDLASGGFMVGDDIMIPTQPEEAPIKKLKKK
Ga0209298_1000000640	F017300	N/A	MNKVAVAADKNGNVIGISPNNPEYGWIRVEQNARVINDRGWLRNAKRSALIKGKVEDLVASNYKDGEEITGKIIVVESHDPFNPENPDRDIKIAGDTGVICRVDDQAIYRQTFFTPNVNAQDELIMHTNAEEIKEVQSAQRAIGSLNKSRLKELQAEL
Ga0209298_1000000664	F066792	AGG	MTPRENPSIAAFKVWVFPTLVSLVSLLIWNDVNEIKSDVKLLMAQSNIDKTRIDNLERQMFKTASVPEEPTKQLIDFQQVLAVLPDNKTLKGKYYKTIKYDF
Ga0209298_1000000670	F031491	N/A	MSDDEHKEWKKAKLDAIRDYHQELIDDLKILRTDFNMKMPFYNSRGEMVVGIFASEFKKEKGFFFELVTRGLEPINTERTVYRVQPSVTFQDEYELNEKGSYLVSLDELRTVNPQSVAISKSSAVTSSDRFNTKQPTAPTPDVMYKAPAPMEDAPYSEMTIRDYYAIHTGKPVSVKTWLNELIKQK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209298_10000006

Overview

Ecosystem & Geography

Associated Families

Sequences