NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209079_10304723

Scaffold Ga0209079_10304723


Overview

Basic Information
Taxon OID3300027972 Open in IMG/M
Scaffold IDGa0209079_10304723 Open in IMG/M
Source Dataset NameFreshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 10-12cm September2015 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)540
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → unclassified bacterial viruses → Synechococcus phage S-EIVl(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa

Source Dataset Sampling Location
Location Namenear Jamestown, North Dakota
CoordinatesLat. (o)47.0956Long. (o)-99.1001Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001190Metagenome / Metatranscriptome753Y
F102115Metagenome / Metatranscriptome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0209079_103047231F102115N/ADEKGERTGKRTFTFAQNLLPKYGGDLASRTKITTPDFGSSFTGTPAEIEEQQQNLRDTRQYLYSAGLTNLQGEIDKETQTLKNEGTKQLAKISAQGDIYKQLVGAFSFS
Ga0209079_103047232F001190N/AMSATPTGQGTADDYFDINKFEQLLQRLEGSKGRQQRQKSLESRRDIYAQGLASMMS

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