Scaffold Ga0209079_10010207

Overview

Basic Information

• Taxon OID: 3300027972
• Scaffold ID: Ga0209079_10010207
• Source Dataset Name: Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 10-12cm September2015 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3137
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa

Source Dataset Sampling Location

• Location Name: near Jamestown, North Dakota
• Coordinates
  • Lat. (^o): 47.0956
  • Long. (^o): -99.1001
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006463	Metagenome / Metatranscriptome	372	N
F009004	Metagenome / Metatranscriptome	324	Y
F009958	Metagenome / Metatranscriptome	310	Y
F034772	Metagenome / Metatranscriptome	174	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209079_100102071	F009004	N/A	LVTHTNLKTMKTEFNKVIDFLETQQQENKQNTNQLHLIIQTLCTFLDDEQLQEVENLFNQFKK
Ga0209079_100102072	F034772	N/A	MKNLIDYFTPTTEEHKSFLKHFLSTLTAFILLGGMFYCLMYLKAL
Ga0209079_100102073	F009958	N/A	MENRNLEFWNKGWELTYEFTGWTYSIAGTWEFNDWDEVSEYAFIELDVEISEKWLTETDDNLQPHVLGVRILEDLRLEMQEAINSDLVHYNFWEWKASNDESNYNFYHEL
Ga0209079_100102074	F006463	N/A	MTSGTIYEQMDWWQRQWRGTFDLGLYLEVCRIKKNEQTKFKPMKRFKATFKTWAYVGAPVKLETRIVEAYDVQHVKNLIQKNDDIIIEIKQIEK