Scaffold Ga0209079

Basic Information
Taxon OID	3300027972 Open in IMG/M
Scaffold ID	Ga0209079_10008038 Open in IMG/M
Source Dataset Name	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 10-12cm September2015 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209079_10008038 Open in IMG/M

Source Dataset Name

Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 10-12cm September2015 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3557
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (12.50%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

3557

Total Scaffold Genes

8 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

1 (12.50%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa

Source Dataset Sampling Location
Location Name	near Jamestown, North Dakota
Coordinates	Lat. (^o)	47.0956	Long. (^o)	-99.1001	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

near Jamestown, North Dakota

Coordinates

Lat. (^o)

47.0956

Long. (^o)

-99.1001

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000716	Metagenome / Metatranscriptome	923	Y
F028489	Metagenome / Metatranscriptome	191	Y
F064715	Metagenome / Metatranscriptome	128	Y
F076942	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209079_100080382	F028489	N/A	MNMIGKELKIKHAADYSKFAVLPMNRAIDSKHVQKMISSIRKMGVLRCVITCTTDIIEGTMKTYVIDGQHLTTALEREGMPIPYIDIKIESEEELIEKMAYLNNSSKSWDLTNYINAWKMIRPDYMKLFKWKNMYDIEISMLACIATNTSSIRYGTMPIKNGTFTITNTKAEEMCKAFNDIFLKIGMADRGVKFQFLSAFMVAYGTYDHSKVLANIDKHIKTVKLMANGDETGAYIRKQIFNLPK
Ga0209079_100080383	F064715	N/A	MSKPNTKQIKEVADKSETIGNQLYEEFQKNKKLENAKVAIAAFRNTLYANSLLIKNEKI
Ga0209079_100080386	F000716	N/A	MIIMEKLKQQVRDYQLHAGKTYMQYEQDKYSPYQNYLYKRALYGLEALDEKELATMCNKKKQRILNVYKRAQTVLNVFKQKRTIEYTNKFFQFFFPKSLFTQKLIESSEVDEKFKNTLTFKDLNITKDDIISIFIDEGILPKNFLSLTISPNQLPRLKNEKA
Ga0209079_100080387	F076942	GAG	MNSKVIVLADETTGSVVNVSQNNPEYGYIRVQQVRTMIDDNGFLRRKPVSALIPGTLAELKESGFFAGQELDGKIVVEESLEPFNEKDPKRDLKIAGDTGVVCTLGGLPIYRRTKMSFDGNVADKLIKHDNVEQLRAAYANASKSNTSAIQNAAGQDFGIE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209079_10008038

Overview

Ecosystem & Geography

Associated Families

Sequences